Friday, August 10, 2007

British Eyes are Smiling........Or Degenerating


This week in the New England Journal of Medicine we have a study from Cambridge. This is a new player in the established Age Related Macular Degeneration risk polymoprhisms.


Age-related macular degeneration(ARMD) is the leading cause of visual impairment in the elderly and the most common cause of blindness in Western countries. It affects the macular region of the retina. The macula has a high density of photoreceptors and provides detailed central vision.


In the early stages of the disease (referred to as age-related maculopathy), deposits develop. Later, the disease is manifested as either extensive atrophy of the retinal machinery. These conditions can lead to a loss of central vision.

The pathogenesis of age-related macular degeneration is poorly understood. As with other late-onset chronic diseases, susceptibility is influenced by age, ethnic background, and a combination of environmental and genetic factors. Smoking status and family history are well-established determinants of risk.


According to the study which evaluated SNPs from the C3 and C5 genes there was a significant association between C3 polymorphism S/F (Arg80Gly) and ARMD in addition the homozygote carrying 2 FF types actually had an Odds Ratio of 2.6 combined for both Scots and English. For the Scots the risk is higher at 2.9 This is where we really see some risk. If this would be published in the media, they would say "New Gene Increases risk by 290%"


The Sherpa Says: Now this study has some teeth. Personally I feel that if we use a Richter Scale to judge studies and findings my Gestalt would be 4 on the PGP Richter Scale!!! Now we need some prevention studies with these linkages. Any Takers? Lastly, I received a message from Salugen. I vow that I will post the data they have. But I also will review the data prior to posting.




Thursday, August 9, 2007

Personalized Medicine....What about Prevention?

A recent study published and talked about everywhere around the web indicates that our lifestyle matters. If we would just follow these five things, we would save thousands of lives.......How will we carry out personalized medicine if we cannot follow simple preventative measures.

Here's what the Partnership for Prevention Suggests:

The biggest impact would be saving 45,000 lives by encouraging more adults to take a daily low dose of aspirin to prevent heart disease, said the report which was sponsored by the US Centers for Disease Control and Prevention, the Robert Wood Johnson Foundation and the WellPoint Foundation.......
Other measures that would save tens of thousands more American lives every year include more adults getting flu shots

  • 45,000 lives saved from more adults taking a daily low dose of aspirin (current take up rate is below 50 per cent).
  • 42,000 more lives saved by offering smokers professional help to quit, including medication (current level is below 28 per cent).
  • 14,000 more lives saved by more adults having regular screening (current level is below 50 per cent).
  • 12,000 more lives saved by more adults aged 50 or over having an annual flu shot (current level is below 37 per cent).
  • Nearly 4,000 more lives saved by increasing the number of women aged 40 or over who have been screened for breast cancer in the last two years (current level is 67 per cent).

What about the potential for genetics to promote public health? Well, Wylie Burke is a little less optimistic than myself.

The Sherpa Says: What would you do if you knew you were at risk? Would you get the flu shot? What about frequent cancer screening? Taking an aspirin? Or even quitting smoking? I hope with the right Sherpa, you would.....

Tuesday, August 7, 2007

American Society of Human Genetics speaks out on DTC testing


After a wonderful conference call with some friends regarding the future of personal genomes, I was heartened to see ASHG put out a statement on Direct To Consumer (DTC) testing. Here is what these learned individuals say.

Currently, DTC genetic testing is permitted in about half the
states2 and is subject to little oversight at the federal level. In July
2006, the Government Accountability Office issued a report documenting
troubling marketing practices by some DTC testing
companies,3 and the Federal Trade Commission (FTC) issued a
consumer alert cautioning consumers to be skeptical about claims
made by some DTC companies


While DTC testing also encompasses paternity and ancestry testing,
this policy statement addresses solely those genetic tests that
make health-related claims or that directly affect health care decision
making.

For a test to be of good quality,
the laboratory performing it must be able to obtain the correct
answer reliably, meaning that it detects a particular genetic variant
when it is present and does not detect the variant when it
is absent. A test’s accuracy is referred to as “analytic validity.”
Further, there must be adequate scientific evidence to support the
correlation between the genetic variant and a particular health
condition or risk—the so-called clinical validity.

Currently, the federal government exercises limited oversight
of the analytic validity of genetic tests and virtually no oversight
of their clinical validity.


Several complaints have been filed and
are pending with the FTC about a specific DTC genetic-testing
company, and the FTC recently issued a consumer alert warning
the public that “some of these [DTC] tests lack scientific validity,
and others provide medical results that are meaningful only in
the context of a full medical evaluation.”


So there in lies the problem. They have several solutions.


Recommendations
I. Transparency
To promote transparency and to permit providers and consumers to
make informed decisions about DTC genetic testing, companies must
provide all relevant information about offered tests in a readily accessible
and understandable manner.

a. Companies offering DTC genetic testing should disclose the
sensitivity, specificity, and predictive value of the test, and the
populations for which this information is known, in a readily
understandable and accessible fashion.

b. Companies offering DTC testing should disclose the strength
of scientific evidence on which any claims of benefit are based,
as well as any limitations to the claimed benefits. For example,
if a disease or condition may be caused by many factors, including
the presence of a particular genetic variant, the company
should disclose that other factors may cause the condition
and that absence of the variant does not mean the
patient is not at risk for the disease.

c. Companies offering DTC testing should clearly disclose all risks
associated with testing, including psychological risks and risks
to family members.

d. Companies offering DTC testing should disclose the CLIA
certification status of the laboratory performing the genetic
testing.

e. Companies offering DTC testing should maintain the privacy
of all genetic information and disclose their privacy policies,
including whether they comply with HIPAA.

f. Companies offering DTC testing and making lifestyle, nutritional,
pharmacologic, or other treatment recommendations
on the basis of the results of those tests should disclose the
clinical evidence for and against the efficacy of such interventions,
with respect to those specific recommendations
and indications.


The Sherpa Says:

I am still waiting for the data from Salugen/Luxor...........hmmm I wonder why? Wake up people, this field is filled with snake oil salesmen!!!!

Sunday, August 5, 2007

TCF7L2 Strikes again, This time it's the Finns


The Latest edition of Mendel's Garden is up at Scienceroll. If you haven't seen it, the Gregorian Rap All-Stars video is a must see!

It's official. I can say without any doubt that the gene TCF7L2 is somehow implicated in diabetes. Another whole genome association study was performed and results were published in the American Journal of Human Genetics.


The study which performed because there only exist a handful of genes that have been implicated in the genetics of diabetes. These include PPAR gamma, TCF7L2, KCNJ11, CPN10, FTO. And because GWAS is hot now. They selected 4 populations, all Caucasian. 200 Finns with diabetes and 200 without, similar numbers of Ashkenazi Jews, 100 soccer hooligans from Manchester and 99 affected Brits, as well as 100 Germans with diabetes and another 100 without.


What they found was not surprising. TCF7L2 SNPs rs7903146, rs7901695 and rs122255372 were all replicated as linked again with ORs of 1.6-1.7. They also found several candidate loci. None which were that impressive when attempted to be replicated.


So, what does this all mean? Well it means that there is an increased risk for diabetes if you have any of the aforementioned changes in your TCF7L2 gene. But how does that help us? Now that it is shown to be linked, we need some data on how to prevent diabetes in the carriers of altered TCF7L2.


Does anyone have good data on this?
The Sherpa Says: Sometimes I do eat humble pie. That being said, I will not recommend TCF7L2 testing for anyone. Importantly because there are several SNPs associated, not just the SNP that deCode tests for. There is more to this diabetes story than meets the eye.

Thursday, August 2, 2007

The SaluGen response


I wanted to highlight what goes on in my comments section daily. I know that these comments don't often show up on the blog and you frequently have to click them to investigate.

I recently posted on something I feel that is not ready for prime time medicine. This doesn't mean you can't spend a fortune on it to make you feel good. People can even buy and drink tons of alcohol to feel good. Not particularly useful for your health...But it can make you feel good.

From one of my respected readers,

Dear Steve -


This is just not a fair statement. I really enjoy your blog and have commented previously (see link - https://www.blogger.com/comment.g?blogID=6173393362223742012&postID=2267329423294071851).


But to suggest that Salugen is "snake oil company" and that SpaGen is some scheme is just untrue. I would be happy to provide you with greater detail on our Company and on one of our products, SpaGen.


So you know, Salugen is a personalized health and wellness company that leverages our thirty years of research in genetics published in over 350 scientific publications to deliver DNA-customized nutritional solutions based upon patent protected genetic tests.

Obviously a blog is not the best vehicle for disseminating comprehensive information, but let me share with you a few quick facts:

1) The SpaGen survey assessment which looks at health, diet, lifestyle, and Rx interactions/depletions related to nutrients has passed due diligence with the nation's largest PBM which is planning on using it for their own employee base.

2) The SpaGen DNA test is performed in a high-complexity, CLIA-certified laboratory which has been around for over 12 years. Hardly a fly-by-night snake oil company.

3) Our Chief Scientific Officer, Dr. Kenneth Blum, leads our research and development effort and studies to support what we do have been published in JAMA, Nature, Science, Lancet, etc. (hardly discredited rags)

4) Our nutritional supplements are manufactured in facilities that are either licensed by the FDA for pharmaceutical manufacturing or exceed those standards.

So, I would ask that before you rush to judgement about what we do, please take the time to be as thorough as you are in other areas of your blog. I would be happy to elucidate more on how we genotype and customize nutrients.

For example, based upon the MTHFR C677T mutation involved in the metabolism of folate, ultimately converting it into 5-methyl tetrahydrolate folate which is an enzyme that converts homocysteine into methionine, there is a published, randomized, double-blinded placebo-controlled study to demonstrate that by giving a tailored amount of folate (3x the recommended dietary intake) that you can reduce the risk for the nation's largest cause of death by 2.4 times. Not to shabby, eh?


Talk to you soon,
Brian Meshkin(from Salugen)




The Sherpa Said:
August 1, 2007 9:19 PM
Steve Murphy MD said...
Brian,


I ask that you forward me your researchers' abstracts and data on supplementation and disease prevention as well as their published data on genetic polymorphisms and their role in nutritional inadequacy. I would also love to see the journal citations of replication studies carried out by your team. I will happily review these and make an evidence based commentary after I receive these. I don't make rash statements unless I have done some due diligence. Nutrigenomics is in its infancy. We are not talking about the perfect being the enemy of the good. We still don't even know who the enemy is. As for the homcysteine, there was an article in the NEJM which actually showed increased risk with viatmin supplementation to lower homocysteine.

Take Care and Thank You

-Steve

p.s.

The jury is still out on Homocysteine lowering and reduction of cardiovascular risks. Even Nutritional Journals acknowledge that.

Wednesday, August 1, 2007

Another Quack Moment!

This was a recent Press Release from Luxor that I came across.


Salugen, Inc. (http://www.salugen.com/), a leading personalized health and wellness company (Read as A rip you off fly by night snake oil company), announced today that its personalized nutritional support program (Read as a Money shakedown for bogus science) for the world's leading spas and their guests -- SpaGen (http://www.spagen.com/) is now available at the Nurture Spa at Luxor (http://www.luxor.com/).





Where do these press releases come from? Let the buyer beware. Because this VIP deal stands for Very Immediate Profits!!!!


-Steve

Longevity Genetics....What's Old is New!


Today in the news there are reports of Dr. Jonathan Rothberg's plans to extract DNA from the saliva of 100 people over the age of 95. It was also posted on back in July on ABC. I would just like to bring attention to it again and compare this with the work that has already been done by one scientist.


The idea is to study those who have lived a long time. Perhaps there is something in their make up which keeps them alive despite the stressors which all of us face. This is nothing new. Nir Barzilai at Albert Einstein College of Medicine has been doing this for years. I have been at several of his lectures. There is a nice video on SAGE Crossroads about what he is and has done.


Rothberg's project is aptly named the Methselah Project after the famed biblical man who live to be 969 years of age. This is not to be confused with the "rock band" or the biblical revival (hits one and two on my google search)


What will he find. Well let's examine what Nir found. Of the findings, notable were the polymorphisms on cholesterol genes including homozygosity for the -641C allele in the APOC3 promoter as well as a markedly higher frequency of a functional CETP variant that led to increased particle sizes of HDL and LDL and thus a better health performance are some of the first examples of a phenotype and an associated genotype in humans with exceptional longevity.

The CETP example is interesting simply because of a drug that was recently pulled from trials. It was called Torcetrapib. It was designed to boost the levels of HDL by blocking the function of Cholesterol Ester Transfer Protein (CETP). The problem? Increased blood pressure, then stroke and heart attack. When they released data showing increased BP it didn't take a rocket scientist to figure that there would be increased heart attack and stroke. But they continued the trials despite this until finally the data implicated Torcetrapib in increased risk of stroke and MI.


What will Dr Jonathan's project show. Hopefully some of the same linkages. Will we "Cure" aging by figuring out these markers? Well Hsien posts on this topic over at Eye on DNA. I would be interested in what my readers and fellow bloggers have to say. Send me an email.


The Sherpa Says: Longevity genetics is a lot like nutrigenomics......As Dr Ordovas says regarding diet and genes "It is like looking through the keyhole of a door." The relationships are truly complicated and it will take a while till we can recommend measures to prevent Aging. Oh the horrors of this dreaded disease! The Buddha would say differently and so would the Sherpa.